Monday, March 5, 2012

1203.0321 (Niels Drost et al.)

High-Performance Distributed Multi-Model / Multi-Kernel Simulations: A Case-Study in Jungle Computing    [PDF]

Niels Drost, Jason Maassen, Maarten A. J. van Meersbergen, Henri E. Bal, F. Inti Pelupessy, Simon Portegies Zwart, Michael Kliphuis, Henk A. Dijkstra, Frank J. Seinstra
High-performance scientific applications require more and more compute power. The concurrent use of multiple distributed compute resources is vital for making scientific progress. The resulting distributed system, a so-called Jungle Computing System, is both highly heterogeneous and hierarchical, potentially consisting of grids, clouds, stand-alone machines, clusters, desktop grids, mobile devices, and supercomputers, possibly with accelerators such as GPUs. One striking example of applications that can benefit greatly of Jungle Computing Systems are Multi-Model / Multi-Kernel simulations. In these simulations, multiple models, possibly implemented using different techniques and programming models, are coupled into a single simulation of a physical system. Examples include the domain of computational astrophysics and climate modeling. In this paper we investigate the use of Jungle Computing Systems for such Multi-Model / Multi-Kernel simulations. We make use of the software developed in the Ibis project, which addresses many of the problems faced when running applications on Jungle Computing Systems. We create a prototype Jungle-aware version of AMUSE, an astrophysical simulation framework. We show preliminary experiments with the resulting system, using clusters, grids, stand-alone machines, and GPUs.
View original: http://arxiv.org/abs/1203.0321

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